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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14865515_14866467_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14865515 - 14866467
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCTCAGA
5'SS Class:
major
3'SS Sequence:
CTCTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCCTCCTAACC
Flanking Amino Acid:
ITVELYPTDKRATAFGILNG
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.1
58
42.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
78.2
0.63
0.7
72.3
26
Minor 5ss
32.3
-2
3
40.6
45.1
Minor BPS
54.7
0.13
1.7
63.99
41.6

Associated Gene:

Gene:
SV2B
Ensembl Gene ID:
ENSAPLG00000014580
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015210
14839546 - 14867651
28106