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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14882387_14882712_F

Intron Information:

Intron Rank:
129123
Intron Class:
major
Intron Phase:
Intron Coordinates:
14882387 - 14882712
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTACAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTTTCTTACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
68.1
0.41
1
64
40.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
63
0.4
1.7
74.59
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018965
14881766 - 14892755
10990
ENSAPLT00000019618
14881766 - 14892755
10990