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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14882387_14889336_F

Intron Information:

Intron Rank:
129131
Intron Class:
major
Intron Phase:
Intron Coordinates:
14882387 - 14889336
Intron Length:
6950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTATTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.6
0.73
0.9
77.1
37.1
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
55.9
0.18
1.7
68.83
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040855
14881766 - 14896063
14298
ENSAPLT00000045509
14881766 - 14892755
10990