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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1492081_1494958_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1492081 - 1494958
Intron Length:
2878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTTCATT
Flanking Amino Acid:
YFLCGLKGIQEHFGLNNPTG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
77.2
0.61
0.9
78.2
35.2
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
62.2
0.46
1.7
80
36.6

Associated Gene:

Gene:
GALK2
Ensembl Gene ID:
ENSAPLG00000004342
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004482
1482686 - 1537557
54872
ENSAPLT00000026113
1482988 - 1537557
54570
ENSAPLT00000021501
1482686 - 1537557
54872