About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14956247_14956548_F

Intron Information:

Intron Rank:
138376
Intron Class:
major
Intron Phase:
Intron Coordinates:
14956247 - 14956548
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCCTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.1
42.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.6
0.53
0.9
66.9
38.3
Minor 5ss
41.7
-0.9
3.1
56
48.1
Minor BPS
83
1.03
1.4
91.52
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024466
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031272
14955890 - 14959667
3778