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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14956710_14959529_F

Intron Information:

Intron Rank:
138377
Intron Class:
major
Intron Phase:
Intron Coordinates:
14956710 - 14959529
Intron Length:
2820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTAAACTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
45.3
-0.2
2
63.24
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024466
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031272
14955890 - 14959667
3778