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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14966897_14967012_F

Intron Information:

Intron Rank:
135627
Intron Class:
major
Intron Phase:
Intron Coordinates:
14966897 - 14967012
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTCCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTTCTGACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
32.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.6
0.69
0.8
74.1
34.9
Minor 5ss
30.9
-2.2
3.2
40.5
38.7
Minor BPS
48.7
-0
1.8
67.97
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022983
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022788
14966818 - 14967992
1175