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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14991392_15013631_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14991392 - 15013631
Intron Length:
22240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CTCTCAGTAACT
Flanking Amino Acid:
LAQGTVGAYLVSVLTTLERR
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
84.9
0.79
0.6
81.1
24.1
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
53
0.17
2.3
76.66
45.8

Associated Gene:

Gene:
SLCO3A1
Ensembl Gene ID:
ENSAPLG00000012595
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025293
14991194 - 15108918
117725
ENSAPLT00000013125
14991194 - 15112368
121175
ENSAPLT00000012804
14991194 - 15112524
121331
ENSAPLT00000040876
14991194 - 15141968
150775