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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15085854_15088474_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15085854 - 15088474
Intron Length:
2621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TGCCCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAC
U12 Branch Point Sequence:
TGCCACTTACAC
Flanking Amino Acid:
IYVDAVFIDTSKLDITPDDP
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.4
38.8
Major BPS
60.5
0.26
1.1
70.3
34.5
Major PPT
78.9
0.65
0.8
72.7
32.1
Minor 5ss
33.3
-1.9
3.2
39.9
40.2
Minor BPS
46
-0.3
1.9
55.09
42.3

Associated Gene:

Gene:
SLCO3A1
Ensembl Gene ID:
ENSAPLG00000012595
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025293
14991194 - 15108918
117725
ENSAPLT00000013125
14991194 - 15112368
121175
ENSAPLT00000012804
14991194 - 15112524
121331
ENSAPLT00000040876
14991194 - 15141968
150775