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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15096774_15098695_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15096774 - 15098695
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGCTGATAACT
Flanking Amino Acid:
LTTSSANQLLGMTAIPCACL
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.5
32.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
30.1
-2.3
2.6
28.4
36
Minor BPS
48.3
-0
2.3
73.87
42.9

Associated Gene:

Gene:
SLCO3A1
Ensembl Gene ID:
ENSAPLG00000012595
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040876
14991194 - 15141968
150775
ENSAPLT00000025293
14991194 - 15108918
117725
ENSAPLT00000013125
14991194 - 15112368
121175
ENSAPLT00000012804
14991194 - 15112524
121331