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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15098895_15099824_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15098895 - 15099824
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TACCTGTTAATT
Flanking Amino Acid:
VAGVTVPYGNNSTPTSSLDP
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
72.6
37.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82.7
0.74
0.8
76.1
32.6
Minor 5ss
37.2
-1.4
2.9
46.5
35.3
Minor BPS
51.5
0.12
2
69.76
41.6

Associated Gene:

Gene:
SLCO3A1
Ensembl Gene ID:
ENSAPLG00000012595
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025293
14991194 - 15108918
117725
ENSAPLT00000013125
14991194 - 15112368
121175
ENSAPLT00000012804
14991194 - 15112524
121331
ENSAPLT00000040876
14991194 - 15141968
150775