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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15099964_15104344_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15099964 - 15104344
Intron Length:
4381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TGCTCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAA
U12 Branch Point Sequence:
TTTCCCTGAACC
Flanking Amino Acid:
SACFAGCSSTNLSGCSCLSS
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.4
44
Major BPS
57.2
0.18
1.1
48.9
36.6
Major PPT
74.8
0.56
0.8
68.5
31.9
Minor 5ss
40.2
-1.1
2.9
53
44
Minor BPS
77.5
0.84
1.3
85.44
31.9

Associated Gene:

Gene:
SLCO3A1
Ensembl Gene ID:
ENSAPLG00000012595
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025293
14991194 - 15108918
117725
ENSAPLT00000013125
14991194 - 15112368
121175
ENSAPLT00000012804
14991194 - 15112524
121331
ENSAPLT00000040876
14991194 - 15141968
150775