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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15104521_15107457_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15104521 - 15107457
Intron Length:
2937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ATCGATTTCACT
Flanking Amino Acid:
AQTPSVIILIRTVSPELKSY
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
79.1
0.65
0.7
72.3
26
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
47.4
-0.1
2
66.5
44.6

Associated Gene:

Gene:
SLCO3A1
Ensembl Gene ID:
ENSAPLG00000012595
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040876
14991194 - 15141968
150775
ENSAPLT00000025293
14991194 - 15108918
117725
ENSAPLT00000013125
14991194 - 15112368
121175
ENSAPLT00000012804
14991194 - 15112524
121331