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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15107523_15111988_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15107523 - 15111988
Intron Length:
4466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTCTCTTATTT
Flanking Amino Acid:
GVLFLLLRLLGFIPPPLIFG
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
78.9
0.65
1
75.7
38.1
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
61.9
0.45
1.6
76.56
40.7

Associated Gene:

Gene:
SLCO3A1
Ensembl Gene ID:
ENSAPLG00000012595
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040876
14991194 - 15141968
150775
ENSAPLT00000013125
14991194 - 15112368
121175
ENSAPLT00000012804
14991194 - 15112524
121331