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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1515937_1524876_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1515937 - 1524876
Intron Length:
8940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TACTACTTAATG
Flanking Amino Acid:
SQILSQNTQDVSTFKLHQRA
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
79.8
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
77
0.61
0.9
77
37
Minor 5ss
43.1
-0.8
2.9
54.5
43.9
Minor BPS
65.2
0.34
1.6
65.54
42.3

Associated Gene:

Gene:
GALK2
Ensembl Gene ID:
ENSAPLG00000004342
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026113
1482988 - 1537557
54570
ENSAPLT00000021501
1482686 - 1537557
54872
ENSAPLT00000004482
1482686 - 1537557
54872