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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15161423_15174869_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15161423 - 15174869
Intron Length:
13447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GGTTTATAAATA
Flanking Amino Acid:
ISEIEEEEGSGSSGGRGTIR
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
86.3
0.82
0.8
80.6
31.4
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
48.8
-0
1.9
61.56
38.6

Associated Gene:

Gene:
ST8SIA2
Ensembl Gene ID:
ENSAPLG00000012464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012987
15161319 - 15188015
26697