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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15179778_15186726_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15179778 - 15186726
Intron Length:
6949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAC
U12 Branch Point Sequence:
GGGGCAATAACA
Flanking Amino Acid:
PSLRLLHAVRGYWLTNKVHI
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.8
35.2
Major BPS
57.8
0.19
1.1
59.6
32.6
Major PPT
88.8
0.87
0.7
84.2
30.7
Minor 5ss
24.8
-2.9
3
22.4
37
Minor BPS
45.9
-0.3
2
55.38
42.8

Associated Gene:

Gene:
ST8SIA2
Ensembl Gene ID:
ENSAPLG00000012464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012987
15161319 - 15188015
26697