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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15202271_15218797_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15202271 - 15218797
Intron Length:
16527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TTGAATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
EDSTVFDVKYRKPSKLAVPC
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
74.8
0.56
1
68.5
41.8
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
FAM174B
Ensembl Gene ID:
ENSAPLG00000028006
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023961
15202204 - 15227485
25282