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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15212229_15218797_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15212229 - 15218797
Intron Length:
6569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TCCTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTTCTGCAACT
Flanking Amino Acid:
EDSTVFDVKYR*
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.1
0.7
0.8
72.3
37.8
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
55.1
0.24
2.2
79.65
42.8

Associated Gene:

Gene:
FAM174B
Ensembl Gene ID:
ENSAPLG00000028006
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045353
15211466 - 15227485
16020