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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1525079_1531853_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1525079 - 1531853
Intron Length:
6775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TATTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
PELDQLVDICLQFGAVGSRL
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
0.8
81.5
35.9
Minor 5ss
43.1
-0.8
3.2
69.3
40.9
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
GALK2
Ensembl Gene ID:
ENSAPLG00000004342
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026113
1482988 - 1537557
54570
ENSAPLT00000021501
1482686 - 1537557
54872
ENSAPLT00000004482
1482686 - 1537557
54872