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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15276124_15276840_F

Intron Information:

Intron Rank:
141000
Intron Class:
major
Intron Phase:
Intron Coordinates:
15276124 - 15276840
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84.5
0.78
0.9
86.4
25.2
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
78.4
0.75
1.3
80.63
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025935
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046446
15271172 - 15276931
5760