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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15316494_15316532_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15316494 - 15316532
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GGGGTGAAGTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ACTTTTGTAAAG
Flanking Amino Acid:
KQYQIVERVIDFGTLICTDT
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
39.2
-0.6
1.7
32.7
45
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
46.7
-0.3
2.1
53.79
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016881
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041699
15302688 - 15318434
15747