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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15317166_15317331_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15317166 - 15317331
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
GCATATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTGTGCATATTT
Flanking Amino Acid:
KSATGHADFPANSRKTSSND
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
75.7
0.58
1
69
41.3
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
45.1
-0.2
2.2
65.36
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016881
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033486
15302688 - 15317558
14871