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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15331629_15334580_F

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
15331629 - 15334580
Intron Length:
2952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTACTCTTT
5'SS Class:
weak_minor
3'SS Sequence:
TTCTTTATCAAAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATCA
Flanking Amino Acid:
LRNDLLFQLAILPVETDKKP
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
56
43.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.1
0.52
1
74.9
32.4
Minor 5ss
56
0.2
3
82.7
36.5
Minor BPS
71.4
0.67
1.5
78.76
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011141
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011667
15331548 - 15340846
9299