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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15334704_15335567_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15334704 - 15335567
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TTGCTCTGACTT
Flanking Amino Acid:
KKENMKDGEEGKLKKRKPRV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
84.7
0.78
0.8
76.9
37.3
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
49.7
0.06
1.7
69.6
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011141
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011667
15331548 - 15340846
9299