About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15338815_15339218_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15338815 - 15339218
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TATGTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TAGCAACTAACA
Flanking Amino Acid:
TDQDLIKLWRRNLWIFVSKF
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
79.8
0.67
0.9
70.3
40.9
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
44.7
-0.4
2
57.78
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011141
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011667
15331548 - 15340846
9299