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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15339319_15339547_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15339319 - 15339547
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGAGCTGTAACC
Flanking Amino Acid:
AHKKRSQEEEEQKKKEDMSS
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
83.1
0.74
0.7
76.9
25
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
49.7
-0
2.1
63.51
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011141
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011667
15331548 - 15340846
9299