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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15339765_15340121_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15339765 - 15340121
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGACACTTAATT
Flanking Amino Acid:
HPNKRHFSNTDRGDWQRDRK
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.7
0.71
0.8
76.3
32.3
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
64.8
0.54
1.5
76.75
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011141
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011667
15331548 - 15340846
9299