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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15340372_15340512_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15340372 - 15340512
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
ATTCTCTCGACA
Flanking Amino Acid:
DHRGHRDYYDRHHHDSKRRR
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
73.7
0.53
1
69.5
36.3
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
58.6
0.27
1.5
70.31
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011141
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011667
15331548 - 15340846
9299