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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15346004_15349731_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15346004 - 15349731
Intron Length:
3728

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCTGGAGC
5'SS Class:
major
3'SS Sequence:
CCCTTCCTGCGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTGCAG
U12 Branch Point Sequence:
GGTGCCTGCAGG
Flanking Amino Acid:
RDSATLSGLSRA
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
68.5
39.3
Major BPS
40.6
-0.5
1.6
48.7
45.1
Major PPT
49.7
-0
1.7
57
38.7
Minor 5ss
23.8
-3
3.8
34.4
41.5
Minor BPS
41.1
-0.8
2.2
45.56
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022985
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026408
15345996 - 15350269
4274