About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15350105_15352560_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15350105 - 15352560
Intron Length:
2456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTTTTCCTC
Flanking Amino Acid:
PGSSATATSKLTIIFKSFQE
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
68.4
0.41
0.9
61.1
35.1
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
42.4
-0.6
3.5
68.66
38.1

Associated Gene:

Gene:
RGMA
Ensembl Gene ID:
ENSAPLG00000024033
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038851
15348492 - 15371328
22837