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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15365110_15371314_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15365110 - 15371314
Intron Length:
6205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
MRPLRERIVVKARA
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.1
0.72
0.8
73.3
36.5
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
RGMA
Ensembl Gene ID:
ENSAPLG00000024033
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038851
15348492 - 15371328
22837