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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15418818_15433782_F

Intron Information:

Intron Rank:
147447
Intron Class:
major
Intron Phase:
Intron Coordinates:
15418818 - 15433782
Intron Length:
14965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TAACCTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
AGCTGTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73.2
0.52
0.9
70.4
35.7
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
58.5
0.25
1.8
65
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029401
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034185
15414376 - 15436693
22318