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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15446072_15453707_F

Intron Information:

Intron Rank:
142056
Intron Class:
major
Intron Phase:
Intron Coordinates:
15446072 - 15453707
Intron Length:
7636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATGCTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
46.3
-0.2
2.2
66.87
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032109
15445671 - 15589586
143916