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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15612103_15614221_F

Intron Information:

Intron Rank:
149462
Intron Class:
major
Intron Phase:
Intron Coordinates:
15612103 - 15614221
Intron Length:
2119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTGCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.6
0.8
0.8
79.9
32.1
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
56.8
0.3
1.9
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030418
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039052
15601166 - 15614344
13179