Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15643664_15656923_F

Intron Information:

Intron Rank:

147874

Intron Class:

major

Intron Phase:

Intron Coordinates:

15643664 - 15656923

Intron Length:

13260

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAACG

5'SS Class:

strong_major

3'SS Sequence:

AACTCATTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AAGGTTTGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

71.4

38.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.7

0.56

0.9

70.3

39.4

Minor 5ss

33.1

-1.9

2.9

41.1

44.9

Minor BPS

50.2

0.09

1.5

63.62

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046624

15643481 - 15657162

13682

ENSAPLT00000030693

15643481 - 15657555

14075