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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1566805_1567317_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1566805 - 1567317
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
TACACTTGAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
84.2
0.77
0.7
79.2
26.5
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
59.1
0.26
1.5
65.27
40

Associated Gene:

Gene:
FGF7
Ensembl Gene ID:
ENSAPLG00000004328
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004449
1566301 - 1595045
28745