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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1567904_1593860_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1567904 - 1593860
Intron Length:
25957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TGTAACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACTGTGTAACT
Flanking Amino Acid:
KGTREANNNYSILEIRTVAV
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77
0.61
0.9
69.7
41.1
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
48.8
-0
2.4
72.26
45

Associated Gene:

Gene:
FGF7
Ensembl Gene ID:
ENSAPLG00000004328
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004449
1566301 - 1595045
28745