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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15695395_15705810_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15695395 - 15705810
Intron Length:
10416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTTATTAATT
Flanking Amino Acid:
GRNLVIRDRCGTSDPYVKFK
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
65
41.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.4
0.57
0.9
69.6
40.1
Minor 5ss
38.3
-1.3
3.1
47.8
42.4
Minor BPS
70
0.71
1.5
84.39
36.6

Associated Gene:

Gene:
MCTP2
Ensembl Gene ID:
ENSAPLG00000010678
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045838
15676442 - 15788186
111745
ENSAPLT00000028041
15671613 - 15788186
116574
ENSAPLT00000011138
15671613 - 15790439
118827
ENSAPLT00000046165
15667753 - 15790439
122687