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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15705954_15706721_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15705954 - 15706721
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTT
Flanking Amino Acid:
QTLDQKLWIKVYDRDLTSSD
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72
0.5
1
64.2
42.1
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
52.2
0.15
1.5
67.55
37.7

Associated Gene:

Gene:
MCTP2
Ensembl Gene ID:
ENSAPLG00000010678
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045838
15676442 - 15788186
111745
ENSAPLT00000028041
15671613 - 15788186
116574
ENSAPLT00000011138
15671613 - 15790439
118827
ENSAPLT00000046165
15667753 - 15790439
122687