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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15710123_15718638_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15710123 - 15718638
Intron Length:
8516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTCCCTGATTT
Flanking Amino Acid:
SNRKKRSSSKSSFMRSMRLS
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
84.8
0.78
0.8
81.6
35.5
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
56.3
0.28
1.7
75.56
40.9

Associated Gene:

Gene:
MCTP2
Ensembl Gene ID:
ENSAPLG00000010678
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045838
15676442 - 15788186
111745
ENSAPLT00000028041
15671613 - 15788186
116574
ENSAPLT00000011138
15671613 - 15790439
118827
ENSAPLT00000046165
15667753 - 15790439
122687