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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15720614_15727305_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15720614 - 15727305
Intron Length:
6692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
AATGTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATTAACC
Flanking Amino Acid:
DNKKHEELLGTCKVDITALP
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
38.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
68.2
0.41
1
58.9
46.4
Minor 5ss
43.3
-0.7
2.8
57.5
40.5
Minor BPS
71.6
0.66
1.6
77.05
38.5

Associated Gene:

Gene:
MCTP2
Ensembl Gene ID:
ENSAPLG00000010678
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045838
15676442 - 15788186
111745
ENSAPLT00000028041
15671613 - 15788186
116574
ENSAPLT00000011138
15671613 - 15790439
118827
ENSAPLT00000046165
15667753 - 15790439
122687