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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15732584_15734930_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15732584 - 15734930
Intron Length:
2347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTTTTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACAG
Flanking Amino Acid:
LNPEWNKVFTFPIKDIHDVL
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
86.7
0.82
0.7
80.9
29.6
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
55.7
0.04
2.1
70.06
42.7

Associated Gene:

Gene:
MCTP2
Ensembl Gene ID:
ENSAPLG00000010678
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045838
15676442 - 15788186
111745
ENSAPLT00000028041
15671613 - 15788186
116574
ENSAPLT00000011138
15671613 - 15790439
118827
ENSAPLT00000046165
15667753 - 15790439
122687