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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15735034_15744222_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15735034 - 15744222
Intron Length:
9189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CCCCAAACTATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCCCCCCAAACT
Flanking Amino Acid:
LGKVAIPLLSIRNGKQSCYT
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
71.7
34.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
59.1
0.21
0.9
50.7
31.2
Minor 5ss
43.4
-0.7
2.8
62.5
42.2
Minor BPS
49.3
0.03
2
69.96
46.6

Associated Gene:

Gene:
MCTP2
Ensembl Gene ID:
ENSAPLG00000010678
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045838
15676442 - 15788186
111745
ENSAPLT00000028041
15671613 - 15788186
116574
ENSAPLT00000011138
15671613 - 15790439
118827
ENSAPLT00000046165
15667753 - 15790439
122687