Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15783291_15785645_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15783291 - 15785645

Intron Length:

2355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGATTAT

U12 Branch Point Sequence:

TTGTTCTTTACA

Flanking Amino Acid:

EIASFGERIKNTFNWTVPFL

Intron Amino Acid Position:

870

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

26.3

Major BPS

60.8

0.27

1.2

51.8

43.6

Major PPT

0.88

0.7

Minor 5ss

36.1

-1.6

3.3

49.4

41.3

Minor BPS

70.2

0.63

1.6

78.67

37.8

Associated Gene:

Gene:

MCTP2

Ensembl Gene ID:

ENSAPLG00000010678

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045838

15676442 - 15788186

111745

ENSAPLT00000028041

15671613 - 15788186

116574

ENSAPLT00000011138

15671613 - 15790439

118827

ENSAPLT00000046165

15667753 - 15790439

122687