About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15801309_15801528_F

Intron Information:

Intron Rank:
131322
Intron Class:
major
Intron Phase:
Intron Coordinates:
15801309 - 15801528
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTGCCTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.7
82.7
36.5
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
83.3
0.75
0.8
76.9
31.9
Minor 5ss
25.6
-2.8
3.8
40.4
45.7
Minor BPS
58.5
0.26
2
75.86
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020551
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030232
15800885 - 15802705
1821