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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15820822_15821946_F

Intron Information:

Intron Rank:
142546
Intron Class:
major
Intron Phase:
Intron Coordinates:
15820822 - 15821946
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGTTAAA
5'SS Class:
major
3'SS Sequence:
CCTTTAAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGCCCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.2
68.1
38.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73
0.52
1
67.1
37.2
Minor 5ss
30.1
-2.3
2.7
34.1
41.4
Minor BPS
65
0.55
1.4
75.53
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026816
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024926
15820700 - 15822314
1615