About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15828468_15832339_F

Intron Information:

Intron Rank:
142548
Intron Class:
major
Intron Phase:
Intron Coordinates:
15828468 - 15832339
Intron Length:
3872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.9
0.56
0.8
73.8
31
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
64.9
0.45
1.8
78.68
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026816
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032067
15814303 - 15832410
18108