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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15856115_15861296_F

Intron Information:

Intron Rank:
141748
Intron Class:
major
Intron Phase:
Intron Coordinates:
15856115 - 15861296
Intron Length:
5182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.2
0.79
0.7
84.4
23.5
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
47.2
-0.1
2.1
72.04
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026338
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023016
15855839 - 15868295
12457