About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15861395_15862737_F

Intron Information:

Intron Rank:
141749
Intron Class:
major
Intron Phase:
Intron Coordinates:
15861395 - 15862737
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGCCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.4
0.55
1
67.2
42.5
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
76.3
0.9
1.1
85.09
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026338
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023016
15855839 - 15868295
12457